People · Principal Investigators

About

I'm a systems neurobiologist working to understand the mechanisms of cognition and attention using functional brain imaging, both in health and disease. I have a particular interest in understanding how the different arms of the ascending arousal system flexibly modulate the cross-scale organisation of the brain to facilitate adaptive behaviour. I'm currently working as a joint NHMRC/Bellberry fellow at The University of Sydney.

What's a fun fact about you?

I once entered into an overnight BBQ contest in Bandera, Texas.

Projects

Multiscale Brain Organisation

Investigates how neural systems organize across multiple scales, from local circuits to global network dynamics. This project integrates computational models with empirical neurobiological data to understand principles of brain organization.

Thalamocortical Selection

Examines the mechanisms of selective attention through the lens of thalamocortical circuitry. Explores how the thalamus gates information flow to cortex and mediates competitive selection between behavioral alternatives.

AAS + Gain Modulation

Studies how gain modulation in ascending arousal systems affects neural computation and behavior. Combines theoretical models of gain control with experimental measurements to understand how arousal states modulate sensory and motor processing.

Delegation to Automaticity

Investigates the neural mechanisms by which cognitive control is gradually transferred from attention-demanding systems to automatic/subcortical systems during skill learning. Tracks circuit reorganization as behaviors transition from conscious to unconscious processing.

Time-varying Network Reconfiguration

Develops methods to characterize how brain networks dynamically reorganize over behavioral timescales. Combines high-resolution neuroimaging with computational analysis to identify principles governing temporal network reconfigurations.

Cross-species Neurodynamics

Compares neural dynamics and circuit organization across species to identify conserved and divergent principles of brain function. Uses comparative analysis to understand fundamental constraints on neural computation.

Neural basis of Neurodegeneration

Explores how degenerative processes alter neural circuits and brain dynamics in age-related and neurodegenerative conditions. Uses imaging and computational modeling to identify early signatures of neurodegeneration and test intervention strategies.

Selected Publications

The Brain that Controls Itself

Müller EJ, Munn BR, Shine JM

Current Opinion in Behavioral Sciences · 2025DOI ↗PDF ↗
Multiscale Organization of Neuronal Activity Unifies Scale-Dependent Theories of Brain Function

Munn BR, Müller EJ, Favre-Bulle I, Scott E, Lizier JT, Breakspear M, Shine JM

Cell · 2024DOI ↗PDF ↗
Thalamic Contributions to the State and Contents of Consciousness

Whyte CJ, Redinbaugh MJ, Shine JM, Saalmann YB

Neuron · 2024DOI ↗PDF ↗
Functional Neuroimaging as a Catalyst for Integrated Neuroscience

Finn ES, Poldrack RA, Shine JM

Nature · 2023DOI ↗PDF ↗
The Impact of the Human Thalamus on Brain-Wide Information Processing

Shine JM, Lewis LD, Garrett DD, Hwang K

Nature Reviews Neuroscience · 2023DOI ↗PDF ↗
View all publications →