Publications

Our Research Output

2026

2025

Seeing Through the Static: Reduced Imagery Vividness in Aphantasia is Associated with Impaired Temporal Lobe Signal Complexity

Noble C, Taylor NL, Milton F, Fulford J, Tan JB, O'Callaghan C, Zeman A, Shine JM

NeuropsychologiaDOI ↗PDF ↗
Cerebellar and Subcortical Contributions to Working Memory Manipulation

Tan JBC, Orlando IF, Whyte C, Bryant AG, Munn BR, Baracchini G, King M, O'Callaghan C, Müller EJ, Shine JM

Communications BiologyDOI ↗PDF ↗
A Burst-dependent Thalamocortical Substrate for Perceptual Awareness

Whyte CJ, Müller EJ, Aru J, Larkum M, John Y, Munn BR, Shine JM

PLoS Computational BiologyDOI ↗PDF ↗
The Brain that Controls Itself

Müller EJ, Munn BR, Shine JM

Current Opinion in Behavioral SciencesDOI ↗PDF ↗
Gain Neuromodulation Mediates Task-Relevant Perceptual Switches

Wainstein G, Whyte CJ, Martens KAE, Müller EJ, Medel V, Anderson B, Stöttinger E, Danckert J, Munn BR, Shine JM

2024

Abnormal Higher-Order Network Interactions in Parkinson's Disease Visual Hallucinations

Tan JB, Müller EJ, Orlando IF, Taylor NL, Margulies DS, Szeto J, Lewis SJG, Shine JM, O’Callaghan C

Cortical Acetylcholine Dynamics are Predicted by Cholinergic Axon Activity and Behavior State

Neyhart E, Zhou N, Munn BR, Law RG, Smith C, Mridha ZH, Blanco FA, Li G, Li Y, McGinley MJ, ..., Reimer J

Cell ReportsDOI ↗PDF ↗
Integrating Brainstem and Cortical Functional Architectures

Hansen JY, Cauzzo S, Singh K, García-Gomar MG, Shine JM, Bianciardi M, Misic B

Nature NeuroscienceDOI ↗PDF ↗
Tonic and Burst-like Locus Coeruleus Stimulation Distinctly Shift Network Activity Across the Cortical Hierarchy

Grimm C, Duss SN, Privitera M, Munn BR, Karalis N, Frässle S, Wilhelm M, Patriarchi T, Razansky D, Wenderoth N, ..., Zerbi V

Nature NeuroscienceDOI ↗PDF ↗
Causal Evidence for Cholinergic Stabilization of Attractor Landscape Dynamics

Taylor NL, Whyte CJ, Munn BR, Chang C, Lizier JT, Leopold DA, Turchi JN, Zaborszky L, Műller EJ, Shine JM

Cell ReportsDOI ↗PDF ↗
Multiscale Organization of Neuronal Activity Unifies Scale-Dependent Theories of Brain Function

Munn BR, Müller EJ, Favre-Bulle I, Scott E, Lizier JT, Breakspear M, Shine JM

2023

Noradrenergic and Cholinergic Systems Take Centre Stage in Neuropsychiatric Diseases of Ageing

Orlando IF, Shine JM, Robbins TW, Rowe JB, O’Callaghan C

Neuroscience and Biobehavioral ReviewsDOI ↗PDF ↗
Thalamic Contributions to Cognitive Task Activity

Hwang K, Shine JM, Cole MW, Sorenson E

Parallel Processing Relies on a Distributed, Low-Dimensional Cortico-Cerebellar Architecture

Müller EJ, Hou KY, Palesi F, Tan J, Close T, Gandini Wheeler-Kingschott CA, D’Angelo E, Calamante F, Shine JM

Network NeuroscienceDOI ↗PDF ↗
Neuronal Connected Burst Cascades Bridge Macroscale Adaptive Signatures Across Arousal States

Munn BR, Müller EJ, Medel V, Naismith SL, Lizier JT, Sanders RD, Shine JM

Nature CommunicationsDOI ↗PDF ↗
A Thalamocortical Substrate for Integrated Information via Critical Synchronous Bursting

Munn BR, Müller EJ, Aru J, Whyte CJ, Gidon A, Larkum ME, Shine JM

The Non-specific Matrix Thalamus Facilitates the Cortical Information Processing Modes Relevant for Conscious Awareness

Müller EJ, Munn BR, Redinbaugh MJ, Lizier J, Breakspear M, Saalmann YB, Shine JM

Cell ReportsDOI ↗PDF ↗
The Impact of the Human Thalamus on Brain-Wide Information Processing

Shine JM, Lewis LD, Garrett DD, Hwang K

Nature Reviews NeuroscienceDOI ↗PDF ↗

2022

Precision Dynamical Mapping Using Topological Data Analysis Reveals a Hub-like Transition at Rest

Saggar M, Shine JM, Liégeois R, Dosenbach NUF, Fair D

Nature CommunicationsDOI ↗PDF ↗
Dynamic Network Impairments Underlie Cognitive Fluctuations in Lewy body Dementia

Matar E, Ehgoetz Martens KA, Phillips JR, Wainstein G, Halliday GM, Lewis SJG, Shine JM

npj Parkinson's DiseaseDOI ↗PDF ↗
Focal Neuronal Perturbations Re-shape Low-dimensional Trajectories of Brain Activity Supporting Cognitive Performance

Iyer KK, Hwang K, Hearne LJ, Muller E, D’Esposito M, Shine JM, Cocchi L

Nature CommunicationsDOI ↗PDF ↗
The Contribution of Noradrenergic Activity to Anxiety-induced Freezing of Gait

Taylor NL, Wainstein G, Quek D, Lewis SJ, Shine JM, Ehgoetz Martens KA

Movement DisordersDOI ↗PDF ↗
It's About Time: Linking Dynamical Systems With Human Neuroimaging to Understand the Brain

John YJ, Sawyer KS, Srinivasan K, Müller EJ, Munn BR, Shine JM

Network NeuroscienceDOI ↗PDF ↗
Structural Connections Between the Noradrenergic and Cholinergic System Shape the Dynamics of Functional Brain Networks

Taylor N, D'Souza A, Munn B, Lv J, Zaborszky L, Müller E, Wainstein G, Calamante F, Shine J

NeuroImageDOI ↗PDF ↗
Understanding the Effects of Serotonin in the Brain Through its Role in the Gastrointestinal Tract

Shine JM, O’Callaghan C, Walpola IC, Wainstein G, Taylor N, Aru J, Huebner B, John YJ

The Role of the Locus Coeruleus in Shaping Adaptive Cortical Melodies

Wainstein G, Müller EJ, Taylor N, Munn B, Shine JM

Trends in Cognitive SciencesDOI ↗PDF ↗

2021

The Ascending Arousal System Promotes Optimal Performance Through Meso-scale Network Integration in a Visuospatial Attentional Task

Wainstein G, Rojas-Libano D, Medel V, Alnæs D, Kolskår KK, Endestad T, Laeng B, Ossandon T, Crossley N, Matar E, Shine JM

Network NeuroscienceDOI ↗PDF ↗
Brainhack: Developing a Culture of Open, Inclusive, Community-driven Neuroscience

Gau R, Noble S, Heuer K, Bottenhorn KL, Bilgin IP, Yang Y, Huntenburg JM, Bayer JMM, Bethlehem RA, Rhoads SA, ..., Zuo X

2020

Topological Properties of Neuromorphic Nanowire Networks

Loeffler A, Zhu R, Hochstetter J, Li M, Fu K, Diaz-Alvarez A, Nakayama T, Shine JM, Kuncic Z

Frontiers in NeuroscienceDOI ↗PDF ↗
Reducing the Influence of Intra-modular Connectivity in Participation Coefficient

Pedersen M, Omidvarnia A, Shine JM, Jackson GD, Zalesky A

Network NeuroscienceDOI ↗PDF ↗
Dopamine and Functional Connectivity in Patients With Parkinson's Disease and Visual Hallucinations

Powell A, Muller AJ, O'Callaghan C, Sourty M, Shine JM, Lewis SJ

Movement DisordersDOI ↗PDF ↗
Mind-wandering in Parkinson's Disease Hallucinations Reflects Primary Visual and Default Network Coupling

Walpola IC, Muller AJ, Hall JM, Andrews-Hanna JR, Irish M, Lewis SJ, Shine JM, O'Callaghan C

Cerebral CortexDOI ↗PDF ↗
Questions and Controversies in the Study of Time-varying Functional Connectivity in Resting fMRI

Lurie DJ, Kessler D, Bassett DS, Betzel RF, Breakspear M, Kheilholz S, Kucyi A, Liégeois R, Lindquist MA, McIntosh AR, ..., Calhoun VD

Network NeuroscienceDOI ↗PDF ↗
Core and Matrix Thalamic Sub-populations Relate to Spatio-temporal Cortical Connectivity Gradients

Müller E, Munn B, Hearne LJ, Smith JB, Fulcher B, Cocchi L, Shine JM

NeuroImageDOI ↗PDF ↗

2019

Hitting the Brakes: Pathological Subthalamic Nucleus Activity in Parkinson's Disease Gait Freezing

Georgiades MJ, Shine JM, Gilat M, McMaster J, Owler B, Mahant N, Lewis SJG

Transitions in Information Processing Dynamics at the Whole-brain Network Level are Driven by Alterations in Neural Gain

Li M, Han Y, Aburn MJ, Breakspear M, Poldrack RA, Shine JM, Lizier JT

PLoS Computational BiologyDOI ↗PDF ↗
Dopamine Depletion Alters Macroscopic Network Dynamics in Parkinson's disease

Shine JM, Bell PT, Matar E, Poldrack RA, Lewis SJ, Halliday GM, O’Callaghan C

Human Cognition Involves the Dynamic Integration of Neural Activity and Neuromodulatory Systems

Shine JM, Breakspear M, Bell PT, Ehgoetz Martens KA, Shine R, Koyejo O, Sporns O, Poldrack RA

Nature NeuroscienceDOI ↗PDF ↗

2018

The Functional Network Signature of Heterogeneity in Freezing of Gait

Ehgoetz Martens KA, Hall JM, Georgiades MJ, Gilat M, Walton CC, Matar E, Lewis SJG, Shine JM

Understanding the Brain, By Default

Shine JM, Breakspear M

Trends in NeurosciencesDOI ↗PDF ↗
Catecholaminergic Manipulation Alters Dynamic Network Topology Across Cognitive States

Shine JM, van den Brink RL, Hernaus D, Nieuwenhuis S, Poldrack RA

Network NeuroscienceDOI ↗PDF ↗

2017

Distinct Patterns of Temporal and Directional Connectivity among Intrinsic Networks in the Human Brain

Shine JM, Kucyi A, Foster BL, Bickel S, Wang D, Liu H, Poldrack RA, Hsieh L, Hsiang JC, Parvizi J

Journal of NeuroscienceDOI ↗PDF ↗

2016

Computational Specificity in the Human Brain

Shine JM, Eisenberg I, Poldrack RA

Behavioral and Brain SciencesDOI ↗PDF ↗
Predictions Penetrate Perception: Converging Insights from Brain, Behaviour and Disorder

O’Callaghan C, Kveraga K, Shine JM, Adams RB, Bar M

Consciousness and CognitionDOI ↗PDF ↗
Auditory Hallucinations and the Brain's Resting-State Networks: Findings and Methodological Observations

Alderson-Day B, Diederen K, Fernyhough C, Ford JM, Horga G, Margulies DS, McCarthy-Jones S, Northoff G, Shine JM, Turner J, ..., Jardri R

Schizophrenia BulletinDOI ↗PDF ↗
Cerebellar Atrophy in Parkinson's disease and its Implication for Network Connectivity

O’Callaghan C, Hornberger M, Balsters JH, Halliday GM, Lewis SJG, Shine JM

Subcortical Contributions to Large-Scale Network Communication

Bell PT, Shine JM

Neuroscience and Biobehavioral ReviewsDOI ↗PDF ↗
The Dynamics of Functional Brain Networks: Integrated Network States during Cognitive Task Performance

Shine JM, Bissett PG, Bell PT, Koyejo O, Balsters JH, Gorgolewski KJ, Moodie CA, Poldrack RA

2015

Long-term Neural and Physiological Phenotyping of a Single Human

Poldrack RA, Laumann TO, Koyejo O, Gregory B, Hover A, Chen M, Gorgolewski KJ, Luci J, Joo SJ, Boyd RL, ..., Mumford JA

Nature CommunicationsDOI ↗PDF ↗
Dopaminergic Basis for Impairments in Functional Connectivity Across Subdivisions of the Striatum in Parkinson's Disease

Bell PT, Gilat M, O'Callaghan C, Copland DA, Frank MJ, Lewis SJ, Shine JM

Human Brain MappingDOI ↗PDF ↗
Estimation of Dynamic Functional Connectivity using Multiplication of Temporal Derivatives

Shine JM, Koyejo O, Bell PT, Gorgolewski KJ, Gilat M, Poldrack RA

NeuroImageDOI ↗PDF ↗

2014

2013

The Role of Dysfunctional Attentional Control Networks in Visual Misperceptions in Parkinson's Disease

Shine JM, Halliday GM, Gilat M, Matar E, Bolitho SJ, Carlos M, Naismith SL, Lewis SJ

Human Brain MappingDOI ↗PDF ↗
The Role of Frontostriatal Impairment in Freezing of Gait in Parkinson's Disease

Shine JM, Moustafa AA, Matar E, Frank MJ, Lewis SJG

Frontiers in Systems NeuroscienceDOI ↗PDF ↗
Exploring the Cortical and Subcortical fMRI Changes Associated with Freezing in Parkinson's Disease

Shine JM, Matar E, Ward PB, Bolitho SJ, Gilat M, Pearson M, Naismith SL, Lewis SJG

2012

Investigating Visual Misperceptions in Parkinson's disease: a Novel Behavioural Paradigm

Shine JM, Halliday GH, Carlos M, Naismith SL, Lewis SJ

Movement DisordersDOI ↗PDF ↗